21 packages returned for Tags:"bioinformatics"
- 2,620 total downloads
- last updated 6/4/2016
- Latest version: 1.0.12
The common database reader includes:
NCBI genbank reader
NCBI gff/PTT feature sites document reader
KEGG DBGET/LinkDB/BriteText/SSDB rest API
MetaCyc database parser
Common Fasta sequence database I/O
DOOR database reader
etc.
- 2,436 total downloads
- last updated 2/16/2021
- Latest version: 2.0.0-beta5
Statistical functions with a clear biological focus such as Gene Set Enrichment Analysis (GSEA)
- 2,168 total downloads
- last updated 2/16/2021
- Latest version: 2.0.0-beta5
Data visualization for bioinformatic purposes, containing for instance Venn and Chord diagramms
MSNumpress
by:
jdrudolph
- 1,836 total downloads
- last updated 10/16/2018
- Latest version: 0.2.3.18
Implementations of compression schemes for numeric data from mass spectrometers. Inofficial nuget package
- 2,449 total downloads
- last updated 6/4/2016
- Latest version: 1.0.12
This library provides the NCBI blast+ output parser and some data analysis API, like SBH, BBH, venn diagram analysis.
This package also provides a batch schedule extension for the large scale localblast alignment parallel task in multiple localblast process.
project source code can be download from...
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- 2,731 total downloads
- last updated 9/19/2017
- Latest version: 3.0.0-alpha
.NET Bio is an open source bioinformatics/genomics library for .NET Standard 2.0 that is designed to enable simple loading, saving and analysis of biological data. It includes several common parsers as well as a variety of algorithms for pairwise/multiple alignment and assembly operations.
- 4,356 total downloads
- last updated 2/16/2021
- Latest version: 2.0.0-beta5
BioFSharp aims to be a user-friendly library for Bioinformatics written in F#.
This is the core package that contains optimized biological datastructures
(For example aminoacdis, nucleotides, and sequences consisting of them) and core
bioinformatic algorithms (such as alignments or pattern search)....
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- 3,548 total downloads
- last updated 2/16/2021
- Latest version: 2.0.0-beta5
BioFSharp.IO contains read/write functions for a diverse set of biological
file formats such as Fasta, FastQ, GeneBank or GFF, as well as
helper function for searching on or transforming the input data
- 2,160 total downloads
- last updated 2/16/2021
- Latest version: 2.0.0-beta5
BioFSharp.BioContainers gives you the possibility to leverage containerized applications without
leaving you F# environment. We build on the fondation of Docker.DotNet to programmatically access
the the REST API on top of the docker daemon. We provide special functions to use with...
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- 2,312 total downloads
- last updated 2/16/2021
- Latest version: 2.0.0-beta5
Image recognition and analysis using wavelet transformations
- 2,454 total downloads
- last updated 2/16/2021
- Latest version: 2.0.0-beta5
API access to powerful popular bioinformatic databases
- 1,098 total downloads
- last updated 9/21/2017
- Latest version: 3.0.1-alpha
Parallel Sequence Alignment (PAMSAM) aligner for .NET Bio
- 2,334 total downloads
- last updated 2/16/2021
- Latest version: 2.0.0-beta5
Make your workflow ML ready with BioFSharp.ML.
Currently contains helper functionf for CNTK
and a pre-trained model we used in our publication
about predicting peptide observability.
- 2,178 total downloads
- last updated 2/16/2021
- Latest version: 2.0.0-beta5
GPU parallelized functions from BioFSharp
- 571 total downloads
- last updated 9/19/2017
- Latest version: 3.0.0-alpha
Parallel DeNovo Assembler (PaDena) support for .NET Bio
ISADotNet.XLSX
by:
HLWeil
- 822 total downloads
- last updated 3/25/2021
- Latest version: 0.2.5
Excel File IO methods for ISA compliant experimental metadata toolkit in F#. The underlying datamodel can be directly read from and written to ISA-Json and ISA-Excel (ISATab format) files.
- 376 total downloads
- last updated 3/25/2021
- Latest version: 0.2.5
Fable compliant release for the ISA compliant experimental metadata toolkit in F#. Additionally to the compiled library, it is shipped with the uncompiled code.
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