21 packages returned for Tags:"bioinformatics"

Proyecto experimental para el estudio de biosecuencias en el grupo DESTINO

The common database reader includes: NCBI genbank reader NCBI gff/PTT feature sites document reader KEGG DBGET/LinkDB/BriteText/SSDB rest API MetaCyc database parser Common Fasta sequence database I/O DOOR database reader etc.

Statistical functions with a clear biological focus such as Gene Set Enrichment Analysis (GSEA)

Data visualization for bioinformatic purposes, containing for instance Venn and Chord diagramms

Implementations of compression schemes for numeric data from mass spectrometers. Inofficial nuget package

This library provides the NCBI blast+ output parser and some data analysis API, like SBH, BBH, venn diagram analysis. This package also provides a batch schedule extension for the large scale localblast alignment parallel task in multiple localblast process. project source code can be download from... More information

.NET Bio is an open source bioinformatics/genomics library for .NET Standard 2.0 that is designed to enable simple loading, saving and analysis of biological data. It includes several common parsers as well as a variety of algorithms for pairwise/multiple alignment and assembly operations.

BioFSharp aims to be a user-friendly library for Bioinformatics written in F#. This is the core package that contains optimized biological datastructures (For example aminoacdis, nucleotides, and sequences consisting of them) and core bioinformatic algorithms (such as alignments or pattern search).... More information

BioFSharp.IO contains read/write functions for a diverse set of biological file formats such as Fasta, FastQ, GeneBank or GFF, as well as helper function for searching on or transforming the input data

BioFSharp.BioContainers gives you the possibility to leverage containerized applications without leaving you F# environment. We build on the fondation of Docker.DotNet to programmatically access the the REST API on top of the docker daemon. We provide special functions to use with... More information

Image recognition and analysis using wavelet transformations

API access to powerful popular bioinformatic databases

Parallel Sequence Alignment (PAMSAM) aligner for .NET Bio

Make your workflow ML ready with BioFSharp.ML. Currently contains helper functionf for CNTK and a pre-trained model we used in our publication about predicting peptide observability.

GPU parallelized functions from BioFSharp

TMEA (Thermodynamically Motivated Enrichment Analysis) is a thermodynamically motivated approach to gene set enrichment analysis

Parallel DeNovo Assembler (PaDena) support for .NET Bio

ISA compliant experimental metadata toolkit in F#. This project is meant as an easy means to open, manipulate and save ISA (Investigation,Study,Assay) metadata files in the dotnet environment.

Excel File IO methods for ISA compliant experimental metadata toolkit in F#. The underlying datamodel can be directly read from and written to ISA-Json and ISA-Excel (ISATab format) files.

Fable compliant release for the ISA compliant experimental metadata toolkit in F#. Additionally to the compiled library, it is shipped with the uncompiled code.