CSBiology 

Functional graph-library written in F#

Visualization extensions for ISA compliant experimental metadata toolkit in F#. This project helps visualize the experimental workflow described in the experiment metadata.

Make your workflow ML ready with BioFSharp.ML. Currently contains helper functionf for CNTK and a pre-trained model we used in our publication about predicting peptide observability.

API access to powerful popular bioinformatic databases

Create Fornax template with Nfdi4Plants.Fornax.

Querying extensions for the ISA compliant experimental metadata toolkit in F#. This project is meant to allow easy, integrative and ontology guided access to experimental metadata.

Data visualization for bioinformatic purposes

BioFSharp.BioContainers gives you the possibility to leverage containerized applications without leaving you F# environment. We build on the fondation of Docker.DotNet to programmatically access the the REST... More information

GPU parallelized functions from BioFSharp

ARC and ISA xlsx compliant parser for experimental metadata toolkit in F#. This project is meant as an easy means to open, manipulate and save ISA (Investigation,Study,Assay) metadata files in isa-xlsx format.

Image recognition and analysis using wavelet transformations

ARC and ISA json compliant parser for experimental metadata toolkit in F#. This project is meant as an easy means to open, manipulate and save ISA (Investigation,Study,Assay) metadata files in isa-json format.

ARC helper functions for Common workflow language.

ARC helper functions for contracts management.

Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems.

Generic data model to unify various readers and writers for different formats used in protein mass spectrometry

Functionality to query data in the mzio model

MzIO.SQLite Data Reader

MzML Data Reader

CSV IO Extensions for the FsSpreadsheet Datamodel