BioSySNet 0.0.2

.NET 6.0 
dotnet add package BioSySNet --version 0.0.2
NuGet\Install-Package BioSySNet -Version 0.0.2
This command is intended to be used within the Package Manager Console in Visual Studio, as it uses the NuGet module's version of Install-Package. 
<PackageReference Include="BioSySNet" Version="0.0.2" />
For projects that support PackageReference, copy this XML node into the project file to reference the package. 
paket add BioSySNet --version 0.0.2
#r "nuget: BioSySNet, 0.0.2"
#r directive can be used in F# Interactive and Polyglot Notebooks. Copy this into the interactive tool or source code of the script to reference the package. 
// Install BioSySNet as a Cake Addin
#addin nuget:?package=BioSySNet&version=0.0.2

// Install BioSySNet as a Cake Tool
#tool nuget:?package=BioSySNet&version=0.0.2

C# For Bioinformatics and Biological Data Processing: BioSyS.Net

BioSyS_logo

net nuget cs python

Bioinformatics is an interdisciplinary field that analyzes biological data using computer science. I have created a new package for bioinformatics and computational analysis built in C#. This package can analyze biological data such as DNA, RNA, and protein sequences, as well as perform tasks such as Biological Database Scraping. Additionally, 'GEO Analysis' offers a variety of analyses for RNA-seq preprocessing, parsing various biological file formats (FASTA, PDB, SOFT, FASTQ, etc.). BioSySNet also utilizes the Python interpreter to run certain plotting functions (i.e., it uses IronPython to execute Python functions, "so first, you need to make sure that Python is installed on your machine").

Features

  • Scrape useful information from various databases like, DrugBank, UnipProt, PDB etcand PDB.
  • Download and parse some of the important biological file formats such as .pdb, .fasta, .fastq, .soft, and CSV.
  • Built-in statistical functions for differential expression analysis and pre-processing.
  • Built-in CSV reader and manipulation.
  • Graphs for fastq quality analysis, GC plots, and enrichment analysis using Python.
  • Different array computation programs and matrix calculations.
  • Built-in data structures for data science and statistics.

Requirements

BioSyS requires Python on your machine for plotting and for providing some functionalities. First of all, download the Python 3.x version. Then, download the supported version of BioSyS and configure it to your Python interpreter.

Softwares Requirement:

Packages Requirement:

Download

You can easly download the package with nuget package manager:

PM> NuGet\Install-Package BioSySNet -Version 0.0.2

OR

Can also be installed by CLI using dotnet:

> dotnet add package BioSySNet --version 0.0.2

Uses

COMING SOON....

Sometimes the features of Python functions can be defective and cause errors!

Product Compatible and additional computed target framework versions.
.NET net6.0 is compatible.  net6.0-android was computed.  net6.0-ios was computed.  net6.0-maccatalyst was computed.  net6.0-macos was computed.  net6.0-tvos was computed.  net6.0-windows was computed.  net7.0 was computed.  net7.0-android was computed.  net7.0-ios was computed.  net7.0-maccatalyst was computed.  net7.0-macos was computed.  net7.0-tvos was computed.  net7.0-windows was computed.  net8.0 was computed.  net8.0-android was computed.  net8.0-browser was computed.  net8.0-ios was computed.  net8.0-maccatalyst was computed.  net8.0-macos was computed.  net8.0-tvos was computed.  net8.0-windows was computed. 
Compatible target framework(s)
Included target framework(s) (in package)
Learn more about Target Frameworks and .NET Standard.

NuGet packages

This package is not used by any NuGet packages.

GitHub repositories

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Version Downloads Last updated
0.0.2 91 4/24/2024