UploadFIG 2023.8.3.16

UploadFIG - FHIR Implementation Guide (FIG) Uploader R4B

This tool provides a way to deploy a FHIR Implementation Guide to a FHIR Server. The content can be loaded from:

• (-pid) the fhir registry via packageID
• (-s) an explicit web location (complete source URL including filename where applicable)
• (-s) a file on the local filesystem

During the upload step the utility will:

• GET the resource ID directly
  • compare if the resource has changed (excluding meta.versionId, meta.lastUpdated and text)
  • skip if the resource is the same
• search for the resource by canonical URL (if it is a canonical resource)
  • verify that there is not another resource on the server already using that canonical URL (hence uploading may cause issues resolving)<br/> (can be disabled via -pdv false)
  • verify that the version hasn't been messed with

During the processing this utility will:

• Validate any fhirpath invariants in profiles
• Validate any search parameters included (Note: These validation results should be verified as correct and investigate if they would impact the operation of the guide in your environment/toolchain)

Running the utility

Usage:
  UploadFIG [options]

Options:
  -s, --sourcePackagePath <sourcePackagePath>                The explicit path of a package to process (over-rides
                                                             PackageId/Version)
  -fd, --forceDownload                                       Force the download of the package from the source package path
                                                             (If not specified, will use the last downloaded package)
                                                             [default: False]
  -pid, --packageId <packageId>                              The Package ID of the package to upload (from the HL7 FHIR Package
                                                             Registry)
  -pv, --packageVersion <packageVersion>                     The version of the Package to upload (from the HL7 FHIR Package
                                                             Registry)
  -r, --resourceTypes <resourceTypes>                        Which resource types should be processed by the uploader 
                                                             [default: StructureDefinition|ValueSet|CodeSystem|SearchParameter|Library
                                                             |ConceptMap|StructureMap]
  -if, --ignoreFiles <ignoreFiles>                           Any specific files that should be ignored/skipped when processing the
                                                             package
  -ic, --ignoreCanonicals <ignoreCanonicals>                 Any specific Canonical URls that should be ignored/skipped when
                                                             processing the package
  -d, --destinationServerAddress <destinationServerAddress>  The URL of the FHIR Server to upload the package contents to
  -dh, --destinationServerHeaders <destinationServerHeaders> Headers to add to the request to the destination FHIR Server
                                                             e.g. `Authentication: Bearer xxxxxxxxxxx`
  -df, --destinationFormat                                   The format to upload to the destination server
                                                             [default: xml]
  -t, --testPackageOnly                                      Only perform download and static analysis checks on the Package.
                                                             Does not require a DestinationServerAddress, will not try to connect
                                                             to one if provided
                                                             [default: False]
  -pdv, --preventDuplicateCanonicalVersions                  Permit the tool to upload canonical resources even if
                                                             they would result in the server having multiple canonical
                                                             versions of the same resource after it runs
                                                             The requires the server to be able to handle resolving
                                                             canonical URLs to the correct version of the resource
                                                             desired by a particular call. Either via the versioned
                                                             canonical reference, or using the logic defined in the
                                                             $current-canonical operation
                                                             [default: True]
  -cn, --checkAndCleanNarratives                             Check and clean any narratives in the package and remove suspect ones
                                                             (based on the MS FHIR Server's rules)
                                                             [default: False]
  -c, --checkPackageInstallationStateOnly                    Download and check the package and compare with the contents of the
                                                             FHIR Server, but do not update any of the contents of the FHIR Server
                                                             [default: False]
  --includeExamples                                          Also include files in the examples sub-directory
                                                             (Still needs resource type specified)
  --verbose                                                  Provide verbose diagnostic output while processing
                                                             (e.g. Filenames processed)
                                                             [default: False]
  --version                                                  Show version information
  -?, -h, --help                                             Show help and usage information

Installation

As a dotnet tool installation is done through the commandline which will download the latest version from nuget.org (I've included the command to install it into the global dotnet application folder, but you can install it into a local folder if you prefer)

PS C:\Users\brian> dotnet tool install uploadfig --global
You can invoke the tool using the following command: UploadFIG
Tool 'uploadfig' (version '2023.8.2.2') was successfully installed.
PS C:\Users\brian> 

Updating

PS C:\Users\brian> dotnet tool update uploadfig --global
Tool 'uploadfig' was successfully updated from version '2023.8.2.2' to version '2023.8.3.15'.
PS C:\Users\brian> 

Unistalling

PS C:\Users\brian> dotnet tool uninstall uploadfig --global
Tool 'uploadfig' (version '2023.8.3.15') was successfully uninstalled.

Examples

Review the SDOH Clinical Care IG Package

Test the package content and not try and upload any data to a server, and will grab the latest version from the HL7 FHIR Package Registry

> UploadFIG -pid hl7.fhir.us.sdoh-clinicalcare  -t

Verify an installation of the US Core v6.1.0

Check to see if the US Core IG Package v6.1.0 is loaded onto a local server, and if any content has changed

> UploadFIG -pid hl7.fhir.us.core -pv 6.1.0 -c -d https://localhost:44348 --verbose

Skip processing of a specific file

> UploadFIG -d https://localhost:44348 -pid hl7.fhir.au.base -pv 4.0.0 --verbose -if package/StructureDefinition-medication-brand-name.json

Direct download a specific package

(Note that you should include the forceDownload flag here to ensure that it doesn't use a locally saved file)

> UploadFIG -d https://localhost:44348 -s https://example.org/demo-package.tgz --verbose --forceDownload

Test a locally built package

> UploadFIG -s "E:\git\HL7\fhir-sdoh-clinicalcare-publish\output\package.r4b.tgz" -t --verbose

Upload AU Base to a Microsoft FHIR Server

(Note the inclusion of the -cn flag to cleanse any narratives that would be otherwise rejected by the Microsoft FHIR Server)

> UploadFIG -d https://localhost:44348 -pid hl7.fhir.au.base -pv 4.0.0 -cn

Upload the latest version of the SDC IG to a FHIR Server in JSON format

Some fhir servers may only be able to support a single format, so you can specify xml or json explicitly to use while uploading. This is independent of the format of the content that is native inside the IG package.

> UploadFIG -pid hl7.fhir.au.base -d https://localhost:44348 -df json